[Biojava-dev] Biojava - svn migration

Andreas Prlic ap3 at sanger.ac.uk
Fri Dec 28 07:33:03 UTC 2007


Hi Mark,

In the meantime I moved the repository root location to
/home/svn-repositories/biojava

which gives this new checkout line for the main trunk:

svn co svn+ssh://dev.open-bio.org/home/svn-repositories/biojava/ 
biojava-live/trunk ./biojava-live

I have to enter my password multiple times but besides this, it works  
fine.

* Can somebody working on windows  test if checking out and compiling  
biojava works ok?
(to test the EOL issues, see http://biojava.org/wiki/ 
CVS_to_SVN_Migration )

* the next question is still open: How will we provide the anonymous  
checkouts?

Andreas



On 28 Dec 2007, at 01:48, Mark Schreiber wrote:

> Hi all -
>
> I am trying to do a SVN check out with Netbeans but the connection
> just seems to hang without doing anything (same happens with command
> line?). I am using the path specified in the biojava wiki but the
> conversation below suggests that the actual path may be different.
> What then is the 'home' path?
>
> Also, does the SSH+SVN command need to be prepended by an SSH command
> (or plink -ssh on windows)?
>
> - Mark
>
> On Dec 28, 2007 5:37 AM, Hilmar Lapp <hlapp at duke.edu> wrote:
>> I see. Makes sense. -hilmar
>>
>>
>> On Dec 27, 2007, at 4:30 PM, Jason Stajich wrote:
>>
>>> My  idea was that just like
>>> /home/reposiitory/biojava
>>>   we'd put the SVN in
>>> /home/svn-repository/biojava
>>>
>>> So each of the biojava SVN sub-projects ought would be
>>>  /home/svn-repository/biojava/biojava-live
>>>  /home/svn-repository/biojava/biojava-ensj
>>>
>>> /home/svn is really the homedir for the svn user and som utility
>>> stuff like the svn login passwords so I think it is better not to
>>> put the repos in there.
>>>
>>> -jason
>>> On Dec 27, 2007, at 1:31 PM, Hilmar Lapp wrote:
>>>
>>>>
>>>> On Dec 27, 2007, at 12:32 PM, Chris Fields wrote:
>>>>
>>>>>
>>>>> I agree, but there is already a /home/svn directory which appears
>>>>> related to blipkit.  We would need to move the blipkit stuff into
>>>>> it's own subdir and go from there.
>>>>>
>>>>
>>>>
>>>> I.e., it was set up such that blipkit would be the only project
>>>> with in it? I'd assume that was by mistake. Also, the last update
>>>> that I have is that blipkit hasn't been active for a while, though
>>>> I'm not sure.
>>>>
>>>> ChrisM - do you recall the decisions leading to the blipkit svn
>>>> setup? Could it be moved to a subdirectory as ChrisF suggests?
>>>>
>>>>      -hilmar
>>>> --
>>>> ===========================================================
>>>> : Hilmar Lapp  -:-  Durham, NC  -:- hlapp at duke dot edu :
>>>> ===========================================================
>>>>
>>>>
>>>>
>>>
>>
>> --
>> ===========================================================
>> : Hilmar Lapp  -:-  Durham, NC  -:- hlapp at duke dot edu :
>> ===========================================================
>>
>>
>>
>>

-----------------------------------------------------------------------

Andreas Prlic      Wellcome Trust Sanger Institute
                               Hinxton, Cambridge CB10 1SA, UK
                               +44 (0) 1223 49 6891

-----------------------------------------------------------------------




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