[Biojava-dev] NCBI MegaBlast XML

[Harbig, Jeremy M.]

I'm working on an application that submits a MegaBLAST query to NCBI and then parses the results into a local database. I read in both the API and the CVS about NCBI's malformed multiquery XML. I may be completely blind, but it looks like that problem has been corrected on the NCBI site.  If that is the case, would it be difficult for whoever is familiar with the BlastXML section of code to update it to work with the well-formed XML? If not, I may be able to take a shot at it. I greatly appreciate any code updates or advice that you can give.

Kind Regards,

Jeremy
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