[BioSQL-l] Error in load_ncbi_taxonomy.pl

[Hilmar Lapp]

Indeed. I was thinking that there is a 1.0.2 release that includes it, but apparently there isn't. 

It appears that bioperl-db (and thus BioPerl) does not support the SQlite schema (yet).

	-hilmar

On Feb 10, 2012, at 8:12 PM, Peter Cock wrote:

> On Monday, February 6, 2012, mira <mira at lanl.gov> wrote:
>> Hello,
>> 
>> I am interested in using your BioSQL schema for a project I am currently
> working on.  I downloaded version 1.0.1 and
>> found that the sql folder has no schema script for SQLite which I thought
> you were supporting now.  Is that not true?  I
>> have no problems re-writing the schema file but after that I find myself
> trying to fix the Perl script that loads the NCBI
>> taxonomy files...
>> 
>> Can you tell me if BioSQL for SQLite is available and where I can find
> the package for download?
>> 
>> Many thanks,
>> Mira Dimitrijevic
> 
> The latest release of BioSQL was before the SQLite3 schema.
> 
> You can get the schema from BioSQL's GitHub repository.
> 
> I'm not sure if BioPerl supports BioSQL in SQLite yet - Biopython does.
> 
> Peter
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: Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net :
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