[BioSQL-l] trouble cramming genbank

[Hilmar Lapp]

Wow! I have no idea how this can happen. Sounds like MySQL specific 
though. Did you check the  MySQL documentation for whether this is a 
known problem? If after the script bails out you do a 'SELECT 
COUNT(*) FROM seqfeature_qualifier_value' in mysql, what does it 
tell?

	-h

On Monday, October 14, 2002, at 09:36 AM, Josiah Altschuler wrote:

> Hi.  I attempted to place Genbank into mysql on redhat linux by 
> starting
> with all the gbest*.seq files.  I get about half way through them 
> when I get
> the message below.  I'm sort of new to anything to do with 
> mysql-perl-linux.
> I was wondering if anyone out there has seen this error and could 
> possibly
> help me to fix this?
>
> Thanks for any help,
> Josiah
>
>
>
> Reading /n/home/josiah/genbankMirror/gbest177.seq
> DBD::mysql::st execute failed: The table 
> 'seqfeature_qualifier_value' is
> full at
>  /usr/lib/perl5/site_perl/5.6.1/Bio/DB/SQL/SeqFeatureAdaptor.pm 
> line 233,
> <GEN84
>> line 3275634.
> DBD::mysql::st execute failed: The table 
> 'seqfeature_qualifier_value' is
> full at
>  /usr/lib/perl5/site_perl/5.6.1/Bio/DB/SQL/SeqFeatureAdaptor.pm 
> line 233,
> <GEN84
>> line 3275634.
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--
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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