[Biopython] Ancestors form OBO

[Pierre-Yves Chibon]

On Sat, Jun 14, 2014 at 03:16:32PM -0400, Iddo Friedberg wrote:
>    hi,
>    Does anybody have a script that can extract an ancestor list of an
>    ontology term (or all ontology terms) from an OBO file? Or something close
>    enough so I can modify it?

A while ago I wrote https://github.com/pypingou/pygolib that can load and
operate some operation on OBO files, it supports retrieving the parents of a
given term.

The tests folder might provide you some example.


Pierre