[Biopython] Ancestors form OBO

[Michael Schubert]

Have a look at:

https://github.com/mschubert/python-obo

(warning: it's not very well developed but reads OBO files into networkx 
objects - then you can get the ancestors easily)

On 06/14/2014 08:16 PM, Iddo Friedberg wrote:
> hi,
>
> Does anybody have a script that can extract an ancestor list of an 
> ontology term (or all ontology terms) from an OBO file? Or something 
> close enough so I can modify it?
>
> Thanks,
>
> Iddo
>
> -- 
> Iddo Friedberg
> http://iddo-friedberg.net/contact.html
> ++++++++++[>+++>++++++>++++++++>++++++++++>+++++++++++<<<<<-]>>>>++++.>
> ++++++..----.<<<<++++++++++++++++++++++++++++.-----------..>>>+.-----.
> .>-.<<<<--.>>>++.>+++.<+++.----.-.<++++++++++++++++++.>+.>.<++.<<<+.>>
> >>----.<--.>++++++.<<<<------------------------------------.
>
>
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