[Biopython] Ancestors form OBO

[tstr]

Hi,
Some time ago I wrote Biopython module for handling Ontologies and 
calculating terms enrichments. Here is the module:
https://github.com/kkoziara/biopython/tree/master/Bio/Ontology
Bio.Ontology.IO.OboIO contains OboReader which can read the obo file 
into OntologyGraph. OntologyGraph contains get_ancestor method which 
returns all ancestors of a term. It also contains to_networkx method 
which returns networkx representation of OntologyGraph.
I hope it helps.
Regards,
Kamil

On 06/14/2014 09:16 PM, Iddo Friedberg wrote:
> hi,
>
> Does anybody have a script that can extract an ancestor list of an 
> ontology term (or all ontology terms) from an OBO file? Or something 
> close enough so I can modify it?
>
> Thanks,
>
> Iddo
>
> -- 
> Iddo Friedberg
> http://iddo-friedberg.net/contact.html
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> .>-.<<<<--.>>>++.>+++.<+++.----.-.<++++++++++++++++++.>+.>.<++.<<<+.>>
> >>----.<--.>++++++.<<<<------------------------------------.
>
>
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