[Biopython] align single sequence to MSA

Nasos Dousis ndousis at gmail.com
Mon Sep 12 01:00:56 UTC 2011


Hello,

First, thank you to everyone who has contributed to the BioPython
codebase and to the mailing list.

I have a FASTA sequence, and I'd like to find the optimal alignment of
that sequence to an MSA.  I don't want to alter the MSA-- I just want
to map the single sequence onto the MSA.  Is there a simple way to do
this by ClustalW or MUSCLE?

Thanks,
Nasos



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