[BioPython] Question!!!

[Michiel De Hoon]

>>> from Bio.Blast import NCBIWWW
>>> result_handle = NCBIWWW.qblast('blastp', 'nr', fasta)
 
Do you have anything between these two lines? Because otherwise, fasta is not
defined.

> Traceback (most recent call last):
>    File "<stdin>", line 1, in ?
> AttributeError: 'module' object has no attribute 'qblast'

Which version of Biopython are you using?

--Michiel.


Michiel de Hoon
Center for Computational Biology and Bioinformatics
Columbia University
1150 St Nicholas Avenue
New York, NY 10032



-----Original Message-----
From: biopython-bounces at lists.open-bio.org on behalf of alper soyler
Sent: Tue 5/2/2006 11:24 AM
To: biopython at lists.open-bio.org
Subject: [BioPython] Question!!!
 
Hi all,
 
 I have a protein in fasta format in a file called 'fasta' and I am writing
below script:
 
 from Bio.Blast import NCBIWWW
 result_handle = NCBIWWW.qblast('blastp', 'nr', fasta)
 
 However, it gives me the following error:
 
 Traceback (most recent call last):
   File "<stdin>", line 1, in ?
 AttributeError: 'module' object has no attribute 'qblast'
 
 Do I have something missing in my Biopython? How can I solve this problem?
Thank you.
 
 Regards,
 Alper 
 
 
		
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