[BioPython] Question!!!

Christof Winter winter at biotec.tu-dresden.de
Tue May 2 16:05:13 UTC 2006


Dear Alper,

you might want to try

print NCBIWWW.__doc__
print NCBIWWW.__file__

to first see if the doc string of the NCBIWWW module has a section that mentions qblast as 
a function, and, if not, check the source code of the module (__file__ tells you the 
location) if it's correct. It should contain a qblast function (line 1038 in my version of 
NCBIWWW.py).

HTH,

Christof


alper soyler wrote:
> Hi all,
>  
>  I have a protein in fasta format in a file called 'fasta' and I am writing below script:
>  
>  from Bio.Blast import NCBIWWW
>  result_handle = NCBIWWW.qblast('blastp', 'nr', fasta)
>  
>  However, it gives me the following error:
>  
>  Traceback (most recent call last):
>    File "<stdin>", line 1, in ?
>  AttributeError: 'module' object has no attribute 'qblast'
>  
>  Do I have something missing in my Biopython? How can I solve this problem? Thank you.
>  
>  Regards,
>  Alper 



More information about the Biopython mailing list