[GSoC] 3rd coding week blog post

[Sarah Berkemer]

Hey,

the code is written by Ketil Malde and can be downloaded here:
http://malde.org/~ketil/biohaskell/transalign/ . I probably should include
this into my blog.
The 'transalign_prof' version is just the version where I put in some flags
to get more detailed statistics. And yes, I did the plots with this program
and the Haskell profiling library :) .

Sarah


On Mon, Jun 2, 2014 at 5:19 PM, Eric Talevich <eric.talevich at gmail.com>
wrote:

> Hi Sarah,
>
> This looks very cool so far. Can you point me to the source code for the
> script transalign_prof, and was that the same program that generated
> those nice plots on the wiki?
>
> Thanks,
> Eric
>
>
>
>
> On Mon, Jun 2, 2014 at 6:49 AM, Sarah Berkemer <sarah.berkemer at gmail.com>
> wrote:
>
>> Hello,
>>
>> here is my blogpost and plan for the third coding week.
>> In the last week, I did a time and space profiling analysis, showing which
>> methods are the ones which have the most time and space consumption.
>> Here http://biohaskell.org/GSoC_blog/Weeks_1and2 , you can find the
>> results
>> of the analysis, including plots.
>> Now, I know which methods have to be changed. In this week I plan to fully
>> understand those methods and think about whether to rewrite them or just
>> change some parts. The plan for this week can be found here:
>> http://biohaskell.org/GSoC_blog/Weeks_3and4 .
>>
>> Sarah
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>> GSoC at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/gsoc
>>
>
>