[GSoC] 3rd coding week blog post

Eric Talevich eric.talevich at gmail.com
Mon Jun 2 11:19:42 EDT 2014


Hi Sarah,

This looks very cool so far. Can you point me to the source code for the
script transalign_prof, and was that the same program that generated those
nice plots on the wiki?

Thanks,
Eric




On Mon, Jun 2, 2014 at 6:49 AM, Sarah Berkemer <sarah.berkemer at gmail.com>
wrote:

> Hello,
>
> here is my blogpost and plan for the third coding week.
> In the last week, I did a time and space profiling analysis, showing which
> methods are the ones which have the most time and space consumption.
> Here http://biohaskell.org/GSoC_blog/Weeks_1and2 , you can find the
> results
> of the analysis, including plots.
> Now, I know which methods have to be changed. In this week I plan to fully
> understand those methods and think about whether to rewrite them or just
> change some parts. The plan for this week can be found here:
> http://biohaskell.org/GSoC_blog/Weeks_3and4 .
>
> Sarah
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> GSoC at lists.open-bio.org
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