[EMBOSS] HTML tag mismatch in acdtable output for fuzzpro
Scott Markel
Scott.Markel at accelrys.com
Tue Dec 6 20:21:05 UTC 2011
Peter,
Yes, what I generated for you was Windows-based, but we run EMBOSS on both Windows and Linux in Pipeline Pilot.
Regarding a patch, our next release is later in 2012, so whatever is more convenient for you regarding timing is fine with us.
Scott
-----Original Message-----
From: Peter Rice [mailto:pmr at ebi.ac.uk]
Sent: Tuesday, 06 December 06 2011 12:53 AM
To: Scott Markel
Cc: emboss at lists.open-bio.org; Kristine Briedis
Subject: Re: HTML tag mismatch in acdtable output for fuzzpro
Dear Scott,
On 06/12/2011 00:35, Scott Markel wrote:
> We use BioPerl to build EMBOSS command lines in Pipeline Pilot. After updating BioPerl to 1.6.9 and EMBOSS to 6.4.0 we noticed a problem. There are HTML tag mismatches that BioPerl, via XML::Twig, can't handle and skips. In investigating a bit, it looks like there was a change in the acdtable output.
> And here are the three sets of tag mismatches in the HTML. All involve an opening<th> and a closing</td>.
Oops. Well spotted. Simple fix in ajax/acd/ajacd.c ... we have a new
release due in January when our current funding ends, but will look to
release a patch for you.
From the version number, was this mEMBOSS you were using?
regards,
Peter Rice
EMBOSS Team
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