[EMBOSS] HTML tag mismatch in acdtable output for fuzzpro

Peter Rice pmr at ebi.ac.uk
Tue Dec 6 08:52:33 UTC 2011


Dear Scott,

On 06/12/2011 00:35, Scott Markel wrote:
> We use BioPerl to build EMBOSS command lines in Pipeline Pilot.  After updating BioPerl to 1.6.9 and EMBOSS to 6.4.0 we noticed a problem.  There are HTML tag mismatches that BioPerl, via XML::Twig, can't handle and skips.  In investigating a bit, it looks like there was a change in the acdtable output.

> And here are the three sets of tag mismatches in the HTML.  All involve an opening<th>  and a closing</td>.

Oops. Well spotted. Simple fix in ajax/acd/ajacd.c ... we have a new 
release due in January when our current funding ends, but will look to 
release a patch for you.

 From the version number, was this mEMBOSS you were using?

regards,

Peter Rice
EMBOSS Team



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