[EMBOSS] ORF selection with EMBOSS

[Jon Ison]

A note of it is already on the SourceForge "Feature Requests" ...

J:)



> Hi Jon,
>
> That's exactly what would make me happy. Assuming it makes it easier for
> you if I formulate officially this request, where do I need to send the
> request?
>
> Hervé
>
> On 12/06/2011 12:00 PM, Jon Ison wrote:
>> Hi Hervé
>>
>> Nothing in EMBOSS so far as I'm aware, but if all you want is for checktrans to report the
>> longest
>> ORF then that should be an easy enough option to add.
>>
>> Cheers
>>
>> Jon
>>
>>
>>> Hi,
>>> I have been using transeq and checktrans to find ORFs in DNA sequences.
>>> I have an question regarding the selection of the ORFs in case
>>> checktrans finds multiple ones in the result of transeq: I would like to
>>> select the longest one automatically (assuming it is the correct one).
>>> Is there any existing tool in EMBOSS (or alternatively in any Bio*
>>> library) that does this job?
>>> Cheers,
>>> Hervé
>>> _______________________________________________
>>> EMBOSS mailing list
>>> EMBOSS at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/emboss
>>>
>>
>>
>