[EMBOSS] Genpept entry in MSE

[Peter]

On Tue, Dec 15, 2009 at 12:14 PM, Steve Taylor
<stephen.taylor at imm.ox.ac.uk> wrote:
>
> Hi,
>
> I am trying to load a Genpept entry into MSE, EMBOSS Version 6.0.1 on
> Fedora. Unfortunately it doesn't like the LOCUS line.
>
> It loads, but warns:
>
> Warning: bad Genbank LOCUS line 'LOCUS       ACN78416                 225 aa
>          linear   BCT 21-MAR-2009'
>
> Changing the aa to bp fixes it.

What command line did you use? If you specified format "genbank",
I think you should use format name "genpept" or "refseqp" instead:
http://emboss.sourceforge.net/docs/themes/SequenceFormats.html

Peter