[EMBOSS] EMBOSS 6.1.0 patch 1.3

[Peter Rice]

On 12/14/2009 11:59 AM, Charles Plessy wrote:

> There were two issues that were discussed previously on the EMBOSS user list or
> on the sourceforge tracker, that I do not see fixed in this patch. The EMBOSS
> package distributed by Debian contains a patch for each of them.
>
> 1) To prevent vectorstrip to discard FASTQ qualities.
> http://git.debian.org/?p=debian-med/emboss.git;a=blob;f=debian/patches/transient-vectorstrip.patch;h=c4d8fd1e6c6d223ec8664b1aa08171407f9ace55;hb=HEAD
> https://sourceforge.net/tracker/index.php?func=detail&aid=2886368&group_id=93650&atid=605034

Sorry, we missed that update in goiing through the changes in the 
ajseq.c file.

We will add it to the next patch.

> 2) To help tfm to find the HTML documentation.
> http://git.debian.org/?p=debian-med/emboss.git;a=blob;f=debian/patches/tfm-html.patch;h=c0595eb5008f53fec27e0ba4ff144c6385c6acdd;hb=HEAD
> https://sourceforge.net/tracker/?func=detail&aid=2877960&group_id=93650&atid=605031

This one is wrong. If the documentation is not found in the install 
directory (which it should be with a standard 'make install') tfm looks 
in ajNamValueBaseDir which is the top level directory.

The Debian patch uses ajNamValueRootDir which is the emboss/ 
subdirectory used when finding uninstalled ACD files.

embossversion -full shows both these paths.

Hope this helps,

Peter Rice