[EMBOSS] GCG: FRAMEALIGN- align protein-6 frames of DNA

[Lakshmanan Iyer]

Hello,

Is there an EMBOSS equivalent of GCG:FrameAlign?

It creates an optimal alignment of the best segment of similarity (local
alignment) between a protein sequence and the codons in all possible reading
frames on a single strand of a nucleotide sequence. Optimal alignments may
include reading frame shifts. 

This is a very crucial tool for the evolutionary biologists.

-thanks

-laxman

 

 

Lakshmanan Iyer, Ph. D.

Computational Biologist

Manager of Collaboration and Training

Computational Biology Group

Bauer Center for Genomics Research

Bauer Laboratory

7 Divinity Ave.

Cambridge, MA 02138

www.cgr.harvard.edu <http://www.cgr.harvard.edu> 

Phone:617-384-7647

Fax: 617-495-2196

 

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