[BioRuby] biogems.info and some newish gems

[Matt Yoder]

Aha!  Got it.  Thanks, will get to that soon.

M


On Mon, Sep 29, 2014 at 10:04 AM, Pjotr Prins <pjotr.public14 at thebird.nl> wrote:
> Hi Matt,
>
> Excellent. Do add the gems to biogems.info! That way more people can
> find them.
>
> If a name starts with bio- it should appear within 24 hrs on biogems.info.
>
> Non bio- names you have to add to the biogems.info source (see the
> /etc dir)
>
>   https://github.com/pjotrp/biogems.info/tree/master/etc/biogems
>
> Fork the repo and do a pull request. I'll merge and update.
>
> Pj.
>
> On Sun, Sep 28, 2014 at 10:41:46AM -0500, Matt Yoder wrote:
>> Hi all,
>>
>> A coupe notes.  I'm wondering if the about statement "Biogems are
>> automatically listed at biogems.info when the gem is pushed to
>> rubygems.org, using the biogem tool, and the name of the gem starts
>> with bio- (bio dash), e.g. bio-fasta or bio-gff3. " is presently true?
>>  There are many gems listed that don't start with bio-, and while I
>> haven't looked too closely I suspect some also did not use the biogem
>> tool? How are these getting on the list?
>>
>> For reference, here's a number of gems I've worked on.  They are
>> variously polished!
>>
>> https://github.com/mjy/obo_parser
>> https://github.com/mjy/nexus_parser
>> https://github.com/mjy/rubyMorphbank
>>
>> and, more recently, with my new group (some of these very rough, in dev)
>>
>> https://github.com/SpeciesFileGroup/taxonifi
>> https://github.com/SpeciesFileGroup/ref2bibtex
>> https://github.com/SpeciesFileGroup/sqed
>> https://github.com/SpeciesFileGroup/rubyBHL
>>
>> Finally, perhaps of most interest, developed recently at the open tree
>> hackathon:
>>
>> https://github.com/SpeciesFileGroup/bark
>>
>> And a shameless plug for a new Rails project that will use many if not
>> all of these gems: http://taxonworks.org.  We'd love to have input on
>> any and all projects, and I'd be happy to answer any questions about
>> these efforts.
>>
>> Cheers,
>> Matt Yoder
>> _______________________________________________
>> BioRuby Project - http://www.bioruby.org/
>> BioRuby mailing list
>> BioRuby at mailman.open-bio.org
>> http://mailman.open-bio.org/mailman/listinfo/bioruby
>>