[BioRuby] biogems.info and some newish gems
Pjotr Prins
pjotr.public14 at thebird.nl
Mon Sep 29 15:04:25 UTC 2014
Hi Matt,
Excellent. Do add the gems to biogems.info! That way more people can
find them.
If a name starts with bio- it should appear within 24 hrs on biogems.info.
Non bio- names you have to add to the biogems.info source (see the
/etc dir)
https://github.com/pjotrp/biogems.info/tree/master/etc/biogems
Fork the repo and do a pull request. I'll merge and update.
Pj.
On Sun, Sep 28, 2014 at 10:41:46AM -0500, Matt Yoder wrote:
> Hi all,
>
> A coupe notes. I'm wondering if the about statement "Biogems are
> automatically listed at biogems.info when the gem is pushed to
> rubygems.org, using the biogem tool, and the name of the gem starts
> with bio- (bio dash), e.g. bio-fasta or bio-gff3. " is presently true?
> There are many gems listed that don't start with bio-, and while I
> haven't looked too closely I suspect some also did not use the biogem
> tool? How are these getting on the list?
>
> For reference, here's a number of gems I've worked on. They are
> variously polished!
>
> https://github.com/mjy/obo_parser
> https://github.com/mjy/nexus_parser
> https://github.com/mjy/rubyMorphbank
>
> and, more recently, with my new group (some of these very rough, in dev)
>
> https://github.com/SpeciesFileGroup/taxonifi
> https://github.com/SpeciesFileGroup/ref2bibtex
> https://github.com/SpeciesFileGroup/sqed
> https://github.com/SpeciesFileGroup/rubyBHL
>
> Finally, perhaps of most interest, developed recently at the open tree
> hackathon:
>
> https://github.com/SpeciesFileGroup/bark
>
> And a shameless plug for a new Rails project that will use many if not
> all of these gems: http://taxonworks.org. We'd love to have input on
> any and all projects, and I'd be happy to answer any questions about
> these efforts.
>
> Cheers,
> Matt Yoder
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