[BioRuby] Bio-vcf
Pjotr Prins
pjotr.public14 at thebird.nl
Sat Dec 27 10:04:51 UTC 2014
Ah yes, the template is
https://github.com/pjotrp/bioruby-vcf/blob/master/template/vcf2json_full_header.erb
On Sat, Dec 27, 2014 at 11:03:24AM +0100, Pjotr Prins wrote:
> Hi everyone,
>
> The bio-vcf tool can now parse and output VCF header information. A
> JSON output example can be found at:
>
> https://github.com/pjotrp/bioruby-vcf/blob/master/test/data/regression/vcf2json_full_header.ref
>
> RDF and other formats should be possible too. To parse the header I
> used a ragel lexer, so as to support embedded quoting. It works great.
>
> I'll release a gem soon.
>
> HNY!
>
> Pj.
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