[BioRuby] Bio-vcf
Pjotr Prins
pjotr.public14 at thebird.nl
Sat Dec 27 10:03:24 UTC 2014
Hi everyone,
The bio-vcf tool can now parse and output VCF header information. A
JSON output example can be found at:
https://github.com/pjotrp/bioruby-vcf/blob/master/test/data/regression/vcf2json_full_header.ref
RDF and other formats should be possible too. To parse the header I
used a ragel lexer, so as to support embedded quoting. It works great.
I'll release a gem soon.
HNY!
Pj.
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