[BioRuby] Bio-vcf

Pjotr Prins pjotr.public14 at thebird.nl
Sat Dec 27 10:03:24 UTC 2014


Hi everyone,

The bio-vcf tool can now parse and output VCF header information. A
JSON output example can be found at:

  https://github.com/pjotrp/bioruby-vcf/blob/master/test/data/regression/vcf2json_full_header.ref

RDF and other formats should be possible too. To parse the header I
used a ragel lexer, so as to support embedded quoting. It works great.

I'll release a gem soon.

HNY!

Pj. 


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