[BioRuby] Bio-MAF 1.0.1

[Francesco Strozzi]

Artem, Marjan, Clayton,

you all did a great job, it was a pleasure to follow your progresses
as a co-mentor and clearly you achieved all the goals for your
projects. Your tools are already on my personal list and will be used
in production in the next months on our facility here in Italy.

Thanks for all the hard work and I hope you will stay in contact and
contribute again with the community and the BioRuby people!

Francesco

On Wed, Aug 22, 2012 at 1:01 AM, Michael Barton
<mail at michaelbarton.me.uk> wrote:
> Yes, great work by both of you. I've enjoyed reading your blog posts and it has
> great to see two bioinformaticians developing. Perhaps this may be obvious, I
> think it is worth reiterating though: be sure to highlight this work when
> applying for future positions. This is a great addition to your resume/CV.
>
> Thanks also to the BioRuby members who have committed their time to organising
> and mentoring during this GSOC.
>
> Mike
>
> On Tue, Aug 21, 2012 at 11:47:53PM +0200, Pjotr Prins wrote:
>
>> Thank you Marjan and Clayton. It was our pleasure.
>>
>> Pj.
>>
>> On Tue, Aug 21, 2012 at 12:35:21PM -0700, Clayton Wheeler wrote:
>>
>> > Hi all,
>> >
>> > I've released bio-maf 1.0.1 and written a final GSoC blog post about
>> > it:
>> >
>> > http://csw.github.com/bioruby-maf/blog/2012/08/21/bio-maf_1.0.1/
>> >
>> > This release should be substantially more robust, with solid and
>> > reasonably-performing BGZF support, better CLI tools, and various
>> > robustness, compatibility, and memory-footprint improvements.
>> >
>> > (I've also developed a Galaxy integration for the maf_tile tool;
>> > unlike the existing Galaxy MAF tools, this is capable of filling
>> > in gaps with a FASTA reference sequence, and concatenating
>> > the alignment output from several exons specified in a BED
>> > file. It's not quite all packaged up with the toolshed facility
>> > yet, but I should be able to wrap that up shortly. Sneak preview:
>> > https://gist.github.com/3418576)
>> >
>> > It's been a pleasure working with all of you, and I'm glad I've
>> > been able to deliver something useful. Pjotr, Raoul, Francesco,
>> > thanks for your help and advice this summer! Marjan, Artem, you
>> > guys did excellent work and gave me some great suggestions in the
>> > code reviews.  And, of course, thanks to Google for organizing and
>> > funding this!
>> >
>> > -- Clayton Wheeler cswh at umich.edu
>> > ____________________________________________________________________
>> > BioRuby Project - http://www.bioruby.org/
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>> >
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