[BioRuby] Bio-MAF 1.0.1

[Michael Barton]

Yes, great work by both of you. I've enjoyed reading your blog posts and it has
great to see two bioinformaticians developing. Perhaps this may be obvious, I
think it is worth reiterating though: be sure to highlight this work when
applying for future positions. This is a great addition to your resume/CV.

Thanks also to the BioRuby members who have committed their time to organising
and mentoring during this GSOC.

Mike

On Tue, Aug 21, 2012 at 11:47:53PM +0200, Pjotr Prins wrote:

> Thank you Marjan and Clayton. It was our pleasure.
>
> Pj.
>
> On Tue, Aug 21, 2012 at 12:35:21PM -0700, Clayton Wheeler wrote:
>
> > Hi all,
> >
> > I've released bio-maf 1.0.1 and written a final GSoC blog post about
> > it:
> >
> > http://csw.github.com/bioruby-maf/blog/2012/08/21/bio-maf_1.0.1/
> >
> > This release should be substantially more robust, with solid and
> > reasonably-performing BGZF support, better CLI tools, and various
> > robustness, compatibility, and memory-footprint improvements.
> >
> > (I've also developed a Galaxy integration for the maf_tile tool;
> > unlike the existing Galaxy MAF tools, this is capable of filling
> > in gaps with a FASTA reference sequence, and concatenating
> > the alignment output from several exons specified in a BED
> > file. It's not quite all packaged up with the toolshed facility
> > yet, but I should be able to wrap that up shortly. Sneak preview:
> > https://gist.github.com/3418576)
> >
> > It's been a pleasure working with all of you, and I'm glad I've
> > been able to deliver something useful. Pjotr, Raoul, Francesco,
> > thanks for your help and advice this summer! Marjan, Artem, you
> > guys did excellent work and gave me some great suggestions in the
> > code reviews.  And, of course, thanks to Google for organizing and
> > funding this!
> >
> > -- Clayton Wheeler cswh at umich.edu
> > ____________________________________________________________________
> > BioRuby Project - http://www.bioruby.org/
> > BioRuby mailing list BioRuby at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioruby
> >
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