[BioRuby] R: Ruby 1.9.2 and BioRuby

[Raoul Bonnal]

And ... it works on 1.8.7 and 1.9.1

--
Raoul J.P. Bonnal
Life Science Informatics
Integrative Biology Program
Fondazione INGM
Via F. Sforza 28
20122 Milano, IT
phone: +39 02 006 623  26
fax: +39 02 006 623 46
http://www.ingm.it


> -----Messaggio originale-----
> Da: bioruby-bounces at lists.open-bio.org [mailto:bioruby-
> bounces at lists.open-bio.org] Per conto di Raoul Bonnal
> Inviato: lunedì 27 settembre 2010 12:53
> A: bioruby at lists.open-bio.org
> Oggetto: [BioRuby] Ruby 1.9.2 and BioRuby
> 
> Hello guys,
> Do you have any idea how to solve this error?
> /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:479:in
> `load_missing_constant': Bio is not missing constant Sequence!
> (ArgumentError)
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:183:in `block in
> const_missing'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:181:in `each'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:181:in `const_missing'
>         from /home/ra/deve/bioruby/lib/bio/sequence/compat.rb:15:in
> `<module:Bio>'
>         from /home/ra/deve/bioruby/lib/bio/sequence/compat.rb:13:in
> `<top (required)>'
>         from <internal:lib/rubygems/custom_require>:29:in `require'
>         from <internal:lib/rubygems/custom_require>:29:in `require'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:239:in `block in require'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:225:in `block in
> load_dependency'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:591:in `new_constants_in'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:225:in `load_dependency'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:239:in `require'
>         from /home/ra/deve/bioruby/lib/bio/sequence.rb:15:in `<top
> (required)>'
>         from /home/ra/deve/bioruby/lib/bio/shell/plugin/midi.rb:20:in
> `<top (required)>'
>         from <internal:lib/rubygems/custom_require>:29:in `require'
>         from <internal:lib/rubygems/custom_require>:29:in `require'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:239:in `block in require'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:225:in `block in
> load_dependency'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:591:in `new_constants_in'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:225:in `load_dependency'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:239:in `require'
>         from /home/ra/deve/bioruby/lib/bio/shell.rb:29:in
> `<module:Shell>'
>         from /home/ra/deve/bioruby/lib/bio/shell.rb:17:in `<top
> (required)>'
>         from <internal:lib/rubygems/custom_require>:29:in `require'
>         from <internal:lib/rubygems/custom_require>:29:in `require'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:239:in `block in require'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:225:in `block in
> load_dependency'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:591:in `new_constants_in'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:225:in `load_dependency'
>         from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-
> 3.0.0/lib/active_support/dependencies.rb:239:in `require'
>         from /home/ra/deve/bioruby/bin/bioruby:18:in `<main>'
> 
> --
> Raoul J.P. Bonnal
> Life Science Informatics
> Integrative Biology Program
> Fondazione INGM
> Via F. Sforza 28
> 20122 Milano, IT
> phone: +39 02 006 623  26
> fax: +39 02 006 623 46
> http://www.ingm.it
> 
> 
> 
> 
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