[BioRuby] Ruby 1.9.2 and BioRuby
Raoul Bonnal
bonnalraoul at ingm.it
Mon Sep 27 10:52:50 UTC 2010
Hello guys,
Do you have any idea how to solve this error?
/home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:479:in `load_missing_constant': Bio is not missing constant Sequence! (ArgumentError)
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:183:in `block in const_missing'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:181:in `each'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:181:in `const_missing'
from /home/ra/deve/bioruby/lib/bio/sequence/compat.rb:15:in `<module:Bio>'
from /home/ra/deve/bioruby/lib/bio/sequence/compat.rb:13:in `<top (required)>'
from <internal:lib/rubygems/custom_require>:29:in `require'
from <internal:lib/rubygems/custom_require>:29:in `require'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:239:in `block in require'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:225:in `block in load_dependency'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:591:in `new_constants_in'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:225:in `load_dependency'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:239:in `require'
from /home/ra/deve/bioruby/lib/bio/sequence.rb:15:in `<top (required)>'
from /home/ra/deve/bioruby/lib/bio/shell/plugin/midi.rb:20:in `<top (required)>'
from <internal:lib/rubygems/custom_require>:29:in `require'
from <internal:lib/rubygems/custom_require>:29:in `require'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:239:in `block in require'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:225:in `block in load_dependency'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:591:in `new_constants_in'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:225:in `load_dependency'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:239:in `require'
from /home/ra/deve/bioruby/lib/bio/shell.rb:29:in `<module:Shell>'
from /home/ra/deve/bioruby/lib/bio/shell.rb:17:in `<top (required)>'
from <internal:lib/rubygems/custom_require>:29:in `require'
from <internal:lib/rubygems/custom_require>:29:in `require'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:239:in `block in require'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:225:in `block in load_dependency'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:591:in `new_constants_in'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:225:in `load_dependency'
from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:239:in `require'
from /home/ra/deve/bioruby/bin/bioruby:18:in `<main>'
--
Raoul J.P. Bonnal
Life Science Informatics
Integrative Biology Program
Fondazione INGM
Via F. Sforza 28
20122 Milano, IT
phone: +39 02 006 623 26
fax: +39 02 006 623 46
http://www.ingm.it
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