[BioRuby] Bio::SPTR bug and fix

Naohisa GOTO ngoto at gen-info.osaka-u.ac.jp
Tue Sep 30 09:05:44 UTC 2008


Thank you.

I modified your patch and committed to my repository.

http://github.com/ngoto/bioruby/commit/6299d291b925442d828ff2a95c4526c45dc62208

It will soon be merged to the main bioruby git repo.

Naohisa Goto
ngoto at gen-info.osaka-u.ac.jp / ng at bioruby.org

On Tue, 30 Sep 2008 14:21:12 +1000
"Ben Woodcroft" <donttrustben at gmail.com> wrote:

> Hi,
> 
> So I was trying to parse a uniprot file, and I found that bioruby threw an
> error when asked it to return a DR key that didn't exist in the uniprot file
> (in particular, GO annotations when none were defined).
> 
> I made a branch that fixes this by returning [] in that situation, and added
> a test for it as well:
> http://github.com/wwood/bioruby/tree/sptr_fix
> 
> If this code is good enough then can I request it be merged into the tree?
> 
> Thanks,
> ben
> 
> -- 
> FYI: My email addresses at unimelb, uq and gmail all redirect to the same
> place.
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