[BioRuby] FASTA problem

[Toshiaki Katayama]

Hello Fredrik,

Thank you for your fix!
I have commited your patch to the CVS.

Regards,
Toshiaki Katayama


On 2007/05/18, at 10:17, Fredrik Johansson wrote:

> Hello,
> I had problem running a fasta search locally on my computer, and it
> turned out that Kernel.exec(*cmd) is not very happy to get the array cmd
> with nil as one of its element. This is however what happens in
> bio/app/fasta.rb, if ktup is not set. I changed this to make it work :
>
> --- fasta.rb.old        2007-05-18 09:55:01.000000000 +0900
> +++ fasta.rb    2007-05-18 09:55:37.000000000 +0900
> @@ -114,7 +114,8 @@
>
>    def exec_local(query)
>      cmd = [ @program, *@options ]
> -    cmd.concat([ '@', @db, @ktup ])
> +    cmd.concat([ '@', @db])
> +    cmd.push(@ktup) if @ktup
>
>      report = nil
>
> Something to submit to the repository?
>
> Best regards,
> Fredrik
>
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