[BioRuby] FASTA problem
Fredrik Johansson
fredjoha at bioreg.kyushu-u.ac.jp
Fri May 18 01:17:12 UTC 2007
Hello,
I had problem running a fasta search locally on my computer, and it
turned out that Kernel.exec(*cmd) is not very happy to get the array cmd
with nil as one of its element. This is however what happens in
bio/app/fasta.rb, if ktup is not set. I changed this to make it work :
--- fasta.rb.old 2007-05-18 09:55:01.000000000 +0900
+++ fasta.rb 2007-05-18 09:55:37.000000000 +0900
@@ -114,7 +114,8 @@
def exec_local(query)
cmd = [ @program, *@options ]
- cmd.concat([ '@', @db, @ktup ])
+ cmd.concat([ '@', @db])
+ cmd.push(@ktup) if @ktup
report = nil
Something to submit to the repository?
Best regards,
Fredrik
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