[Biopython] Biopython 1.83 released

[Peter Cock]

Hello all,

Good news for those using a recent Apple computer with the ARM based
CPU, more wheel files are now on PyPI:

$ md5sum biopython-1.83-*_arm64.whl
6d9df88b4d96e514365f72ccdf67f9c2
biopython-1.83-cp310-cp310-macosx_11_0_arm64.whl
744eb007a3e676f26f5d8418153c6fb5
biopython-1.83-cp311-cp311-macosx_11_0_arm64.whl
7d44647f4725c92d2702ffbd18119166
biopython-1.83-cp312-cp312-macosx_11_0_arm64.whl
2abb0cc9d2adcc0fab132385dc7b16a8 biopython-1.83-cp38-cp38-macosx_11_0_arm64.whl
e727783bc1a31371e9fe13f4af906f7e biopython-1.83-cp39-cp39-macosx_11_0_arm64.whl

$ shasum -a 256 biopython-1.83-*_arm64.whl
741abad84165e4caf0c80e485054135f51c21177e50ac6fcc502a45a6e8f7311
biopython-1.83-cp310-cp310-macosx_11_0_arm64.whl
3686ff61df3f24ecf6f23826e4fe5172c5e5f745099bc8fbb176f5304582f88f
biopython-1.83-cp311-cp311-macosx_11_0_arm64.whl
29708772651d930e808cd24c519fd4f39b2e719668944c0aa1eaf0b1deef9f48
biopython-1.83-cp312-cp312-macosx_11_0_arm64.whl
4cc011346bc8af264e3d3ea98c665b6ebe20e503f1dd50ee7e0bc913941b4c6e
biopython-1.83-cp38-cp38-macosx_11_0_arm64.whl
30fa323694ee640978888d0c8c4f61f951d119ccec52b1dd5fe0668cfffb6648
biopython-1.83-cp39-cp39-macosx_11_0_arm64.whl

Peter

On Wed, Jan 10, 2024 at 12:53 PM Peter Cock <p.j.a.cock at googlemail.com> wrote:
>
> Dear Biopythoneers,
>
> Our first release of 2024 is now out, sooner than planned as this is purely
> to revert the removal of the .strand, .ref, and .ref_db attributes of the
> SeqFeature which was done in Biopython 1.82 without a deprecation period.
> They are again aliases for .location.strand etc, but trigger deprecation
> warnings. See https://biopython.org/wiki/Deprecation_policy
>
> We apologize for any inconvenience and thank you to those reporting this.
>
> This release of Biopython supports Python 3.8, 3.9, 3.10, 3.11 and 3.12. It
> has also been tested on PyPy3.9 v7.3.13. Python 3.8 is approaching end of
> life, our support for it is now deprecated.
>
> The source code tar-ball and pre-compiled wheels for the major platforms
> are all live on PyPI:
>
> https://pypi.org/project/biopython/
>
> We would expect the release to be on conda-forge shortly too.
>
> Happy New Year!
>
> Peter
>
> --
>
> For reference, the checksum are as follows:
>
> $ md5sum biopython-1.83*
> 9bf7983d9844353766d7cc43b83ba5e2
> biopython-1.83-cp310-cp310-macosx_10_9_x86_64.whl
> d971d232b93142dc5e80a4911b082b57
> biopython-1.83-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
> 0fa1219ddefcd516778c2d1e0a010a50 biopython-1.83-cp310-cp310-win32.whl
> 6b0ba4b7ac995731ec616c6bc98dd7ee biopython-1.83-cp310-cp310-win_amd64.whl
> 6bd79e8c491f13a943c5b9343cc12a94
> biopython-1.83-cp311-cp311-macosx_10_9_x86_64.whl
> ffca1c008500386c66e7db81a6c14045
> biopython-1.83-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
> 8f61939eac588e457f870d309092f760 biopython-1.83-cp311-cp311-win32.whl
> 962d154b9437605273297fb593a7cbe5 biopython-1.83-cp311-cp311-win_amd64.whl
> 5df62b50b6c7ee88012ca571a091f2cf
> biopython-1.83-cp312-cp312-macosx_10_9_x86_64.whl
> cc49935b2317d894474249de5aaeb4eb
> biopython-1.83-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
> 612eed5554a3fb5a58196fc3539f04a5 biopython-1.83-cp312-cp312-win32.whl
> b8aa5639bde4b3b75bcdd6ded18f04b6 biopython-1.83-cp312-cp312-win_amd64.whl
> 2efc998e0d2c629636fd453a256a7bfa biopython-1.83-cp38-cp38-macosx_10_9_x86_64.whl
> a4d8e6df63843daff3027da154501160
> biopython-1.83-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
> 7bbc7603b31c774139c783cd05d203c0
> biopython-1.83-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
> 07e9962f1be1cadc050b204622d07252 biopython-1.83-cp38-cp38-win32.whl
> a65395082ae4fc7a165a563e827d7498 biopython-1.83-cp38-cp38-win_amd64.whl
> c425167a0dacd159c3324dd61afcdace biopython-1.83-cp39-cp39-macosx_10_9_x86_64.whl
> 55c44a9e0ed0aea84089466aad59323d
> biopython-1.83-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
> 11a188e0724470eb4698801d5ca0958a biopython-1.83-cp39-cp39-win32.whl
> cc26d8a1f03428b241121c59e9b80b12 biopython-1.83-cp39-cp39-win_amd64.whl
> fa95c92de7cfbb153b070e3da5aaf14a biopython-1.83.tar.gz
> 1861c9e138837fa1d452665cc6c9c20b biopython-1.83.zip
>
> $ shasum -a 256 biopython-1.83*
> e2cc737906d8de47eedbc4476f711b960c16a65daa8cdd021875398c81999a09
> biopython-1.83-cp310-cp310-macosx_10_9_x86_64.whl
> 2df408be9816dd98c28fe181ea93fb6e0d375bf1763ad9ed503ac30bb2df5b1a
> biopython-1.83-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
> a0c1c70789c7e2a26563db5ba533fb9fea0cc1f2c7bc7ad240146cb223ba44a3
> biopython-1.83-cp310-cp310-win32.whl
> 56f03f43c183acb88c082bc31e5f047fcc6d0aceb5270fbd29c31ab769795b86
> biopython-1.83-cp310-cp310-win_amd64.whl
> a01dfdad7210f2fd5c4f36606278f91dbfdda6dac02347206d13cc618e79fe32
> biopython-1.83-cp311-cp311-macosx_10_9_x86_64.whl
> c756c0b81702c705141c87c2805203df01c6d4cf290e8cefd48cbc61a3c85b82
> biopython-1.83-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
> 0496f2a6e6e060d8ff0f34784ad15ed342b10cfe282020efe168286f0c14c479
> biopython-1.83-cp311-cp311-win32.whl
> 8552cc467429b555c604b84fc174c33923bf7e4c735774eda505f1d5a9c2feab
> biopython-1.83-cp311-cp311-win_amd64.whl
> 0d5ce14755a6b49dea4743cf6929570afe5becb66ad222194984c7bf04218f86
> biopython-1.83-cp312-cp312-macosx_10_9_x86_64.whl
> 0b35aa095de0fa8339b70664797d0e83322a1a9d512e2fd52d4e872df5189f56
> biopython-1.83-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
> 118425a210cb3d184c7a78154c5646089366faf124cd46c6056ca7f9302b94ad
> biopython-1.83-cp312-cp312-win32.whl
> ca94e8ea8907de841a515af55acb1922a9de99b3144c738a193f2a75e4726078
> biopython-1.83-cp312-cp312-win_amd64.whl
> e37884fe39e4560bf5934a4ec4ba7f7fe0e7c091053d03d05b20a70557167717
> biopython-1.83-cp38-cp38-macosx_10_9_x86_64.whl
> fd9bc6fef3f6a10043635a75e1a77c9dce877375140e81059c67c73d4ce65c4c
> biopython-1.83-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
> 2c3584122a5daca25b3914a32c52785b051c11518cd5e111e9e89ee04a6234fe
> biopython-1.83-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
> 641c1a860705d6740eb16c6147b2b730b05a8f5974db804c14d5faa8a1446085
> biopython-1.83-cp38-cp38-win32.whl
> 94b68e550619e1b6e3784ed8cecb62f201d70d8b87d3a90365291f065ab42bd9
> biopython-1.83-cp38-cp38-win_amd64.whl
> 81d1e2515b380e1876720ba79dbf50f8ef3a38cc38ba5953ef61ec20d0934ee2
> biopython-1.83-cp39-cp39-macosx_10_9_x86_64.whl
> ec82350c24cdcf34a8d4a5f189d0ff7dc025658098a60e6f0e681d24b6a1414e
> biopython-1.83-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
> e914f7161b3831d7c58db33cc5c7ca64b42c9877c5a776a8313e7a5fd494f8de
> biopython-1.83-cp39-cp39-win32.whl
> aae1b156a76907c2abfe9d141776b0aead65695ea914eaecdf12bd1e8991f869
> biopython-1.83-cp39-cp39-win_amd64.whl
> 78e6bfb78de63034037afd35fe77cb6e0a9e5b62706becf78a7d922b16ed83f7
> biopython-1.83.tar.gz
> 39c4c48dc23bed0f2cc582802d5ce18272cafd5ddb7c693ff0d08cb943c2372d
> biopython-1.83.zip