[Biopython] [PATCH] Use https:// instead of git:// in examples
Adam Sjøgren
asjo at koldfront.dk
Thu Oct 3 13:13:52 UTC 2019
A number of places - companies - have firewalled outgoing access to
the git:// protocol, while https:// is open, so to make it easier to
get started, it makes sense to use the https:// variant.
---
Hi,
Here is a suggested patch for biopython.github.io - I wasn't sure where
to submit it (I don't want to create a Microsoft Github account).
It should be possible to apply the patch by saving the email and running
"git am saved_email.txt".
Best regards,
Adam
wiki/Building_a_release.md | 2 +-
wiki/GitUsage.md | 16 ++++++++--------
wiki/SourceCode.md | 2 +-
3 files changed, 10 insertions(+), 10 deletions(-)
diff --git a/wiki/Building_a_release.md b/wiki/Building_a_release.md
index d59cadc..8d1c724 100644
--- a/wiki/Building_a_release.md
+++ b/wiki/Building_a_release.md
@@ -105,7 +105,7 @@ Making and testing the tar-ball
10. check out clean version somewhere else:
``` bash
- drevil:~tmp1/> git clone git://github.com/biopython/biopython.git
+ drevil:~tmp1/> git clone https://github.com/biopython/biopython.git
drevil:~tmp1/> cd biopython
```
diff --git a/wiki/GitUsage.md b/wiki/GitUsage.md
index 77befd9..ceaeada 100644
--- a/wiki/GitUsage.md
+++ b/wiki/GitUsage.md
@@ -157,7 +157,7 @@ Getting a copy of the repository (called "cloning" in Git terminology)
without GitHub account is very simple:
``` bash
-git clone git://github.com/biopython/biopython.git
+git clone https://github.com/biopython/biopython.git
```
This command creates a local copy of the entire Biopython repository on
@@ -209,7 +209,7 @@ You may want to also link your branch with the official distribution
(see below on how to keep your copy in sync):
``` bash
-git remote add upstream git://github.com/biopython/biopython.git
+git remote add upstream https://github.com/biopython/biopython.git
```
To add additional contributors to your repository on GitHub (i.e. people
@@ -347,7 +347,7 @@ official Biopython branch) to your repository.
Assuming you have issued this command (you only need to do this once):
``` bash
-git remote add upstream git://github.com/biopython/biopython.git
+git remote add upstream https://github.com/biopython/biopython.git
```
Then all you need to do is:
@@ -430,13 +430,13 @@ core developers, or anyone accepting changes on a branch.
For example, suppose Eric has some interesting changes on his public
repository:
-git://github.com/etal/biopython.git
+https://github.com/etal/biopython.git
You must tell git about this by creating a reference to this remote
repository:
``` bash
-git remote add eric git://github.com/etal/biopython.git
+git remote add eric https://github.com/etal/biopython.git
```
Now we can fetch *all* of Eric's public repository with one line:
@@ -448,7 +448,7 @@ remote: Compressing objects: 100% (105/105), done.
remote: Total 105 (delta 77), reused 0 (delta 0)
Receiving objects: 100% (105/105), 27.53 KiB, done.
Resolving deltas: 100% (77/77), completed with 24 local objects.
-From git://github.com/etal/biopython
+From https://github.com/etal/biopython
* [new branch] bug2754 -> eric/bug2754
* [new branch] master -> eric/master
* [new branch] pdbtidy -> eric/pdbtidy
@@ -632,12 +632,12 @@ giving you a URL. Typically this will be on GitHub (but it may be any
public git url). Let us assume that the url is (which happens to be my
clone of Biopython):
-git://github.com/barwil/biopython.git
+https://github.com/barwil/biopython.git
First, you need to get the code from this repository:
``` bash
-git remote add Bartek git://github.com/barwil/biopython.git
+git remote add Bartek https://github.com/barwil/biopython.git
git fetch Bartek
```
diff --git a/wiki/SourceCode.md b/wiki/SourceCode.md
index 8607977..306df9c 100644
--- a/wiki/SourceCode.md
+++ b/wiki/SourceCode.md
@@ -56,7 +56,7 @@ is very simple using the git command line tool, you don't need an
account or password:
``` bash
-git clone git://github.com/biopython/biopython.git
+git clone https://github.com/biopython/biopython.git
```
This command creates a local copy of the entire Biopython repository on
--
2.7.4
--
"We're not unreasonable, I mean, noone's going to eat Adam Sjøgren
your eyes" asjo at koldfront.dk
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