[Biopython] Issues parsing sequences
Fernanda Trancoso
fftrancoso96 at gmail.com
Sat Jan 13 17:55:58 UTC 2018
Hello guys,
I'm trying to do the biopython tutorial and cookbook but i got stuck on the
"2.4.1 Simple FASTA parsing example". It says
Now try this in Python:
from Bio import SeqIO
for seq_record in SeqIO.parse("ls_orchid.fasta", "fasta"):
print(seq_record.id)
print(repr(seq_record.seq))
print(len(seq_record))
But from the second line forward the ">>>" turns into "..." and I have no
idea of what input is missing, since I did copy/paste to be sure that i
wasn't writing something wrong.
Does anyone knows what might be going wrong?
Thanks
--
Fernanda Fontes Trancoso
Aluna de Graduação em Ciências Biológicas na UFMG
Iniciação Científica no Laboratório de Sistemática de Insetos
<http://abelhasufmg.wix.com/lsea>
+55 (31) 9156-6485
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.open-bio.org/pipermail/biopython/attachments/20180113/12f0725e/attachment.html>
More information about the Biopython
mailing list