[Biopython] Population genetics calculations

Kevin Thornton krthornt at uci.edu
Wed Nov 4 16:59:12 UTC 2015


Hello,

I apologize for cross-posting to both the dev and users lists.

I wanted to let everyone know that I've generated a Python interface to my
C++ library "libsequence" (http://github.com/molpopgen/libsequence).

The package is on PyPi: https://pypi.python.org/pypi/pylibseq/0.1.5, and
the repo is on GitHub: http://github.com/molpopgen/pylibseq.

The package provides access to calculations of commonly-used summary
statistics in population genetics, and there is also the ability to so
"sliding window" calculations along a table of variable sites.

I'm hoping that this is useful to the BioPython community.

Best,

Kevin
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