[Biopython] Population genetics calculations
Kevin Thornton
krthornt at uci.edu
Wed Nov 4 16:59:12 UTC 2015
Hello,
I apologize for cross-posting to both the dev and users lists.
I wanted to let everyone know that I've generated a Python interface to my
C++ library "libsequence" (http://github.com/molpopgen/libsequence).
The package is on PyPi: https://pypi.python.org/pypi/pylibseq/0.1.5, and
the repo is on GitHub: http://github.com/molpopgen/pylibseq.
The package provides access to calculations of commonly-used summary
statistics in population genetics, and there is also the ability to so
"sliding window" calculations along a table of variable sites.
I'm hoping that this is useful to the BioPython community.
Best,
Kevin
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