[Biopython] filtering by query coverage

[Peter Cock]

On Mon, Mar 31, 2014 at 2:28 PM, Pathmanaban Ramasamy
<rpathmanaban1 at gmail.com> wrote:
> Hi i am new to biopython and i would like to filter my xml outfile based on
> Query coverage percentage. Can someone help me with this? thanks in advance

How are you defining query coverage percentage?

It might be simpler to use BLAST+ 2.2.28 or later with the tabular output
and specifically include one of these columns:

            qcovs means Query Coverage Per Subject
          qcovhsp means Query Coverage Per HSP

Filtering tabular BLAST output on query coverage would then be easy.

Peter