[Biopython] Get all alignments of a sequence against another

[Tal Einat]

On Fri, Mar 14, 2014 at 11:16 AM, Kevin Rue <kevin.rue at ucdconnect.ie> wrote:
> >>> import fuzzysearch
> >>> fuzzysearch.find_near_matches_with_ngram("GGGTTLTTSS","XXXXXXXXXXXXXXXXXXXGGGTTVTTSSAAAAAAAAAAAAAGGGTTLTTSSAAAAAAAAAAAAAAAAAAAAAABBBBBBBBBBBBBBBBBBBBBBBBBGGGTTLTTSS",
>>>> 1)

By the way, you should usually just use
fuzzysearch.find_near_matches(...), which will choose an appropriate
search method for you depending on the given parameters.

- Tal Einat