[Biopython] Handle for OrthoXML

[Philipp Schiffer]

Hi Peter,  

thanks for the info. I’ll check out the ElementTree parser and also see if some of the SeqXML functionality fulfils my purposes.

Best

Philipp  

--  
Philipp Schiffer
Sent with Sparrow (http://www.sparrowmailapp.com/?sig)


On Wednesday, 12 March 2014 at 10:26, Peter Cock wrote:

> Hi Philipp,
>  
> No, Biopython does not have a parser for OrtherXML, but
> Bio.SeqIO can read/write the related SeqXML format.
>  
> You could try using the ElementTree XML parser from the
> Python standard library?
>  
> Peter
>  
> On Wed, Mar 12, 2014 at 7:09 AM, Philipp Schiffer
> <philipp.schiffer at gmail.com (mailto:philipp.schiffer at gmail.com)> wrote:
> > Hi all!
> >  
> > Is there a handle/module for OrthoXML parsing?
> > http://orthoxml.org/xml/Documentation.html
> >  
> > Cheers
> >  
> > Philipp
> >  
> >  
> > --
> > Sent from Gmail Mobile
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>  
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>