[Biopython] Bio.PDB.PDBParser() Superimposer()

[Jurgens de Bruin]

Hi João Rodrigues,

Thanks for the reply much appreciated, this does make sense but I would
greatly appreciate examples with some code.

Thanks


On 16 January 2014 13:59, João Rodrigues <anaryin at gmail.com> wrote:

> Hi Jurgens,
>
> When you pass the two sequences to the Superimposer I guess you can trim
> the sequence to that which you want (pass a list of residues that is sliced
> to those that you want to include). The only requirement would be that both
> have the same number of atoms.
>
> If this doesn't make much sense I can give an example with code.
>
> Cheers,
>
> João
>
>
> 2014/1/16 Jurgens de Bruin <debruinjj at gmail.com>
>
>> Hi,
>>
>> I am trying to calculate the RMS for two pdb files but the proteins differ
>> in length. Currently I want to exclude the leading/trailing parts of the
>> longer sequence but I am having difficulty figuring out how I will be able
>> to do this.
>>
>> Any help would be appreciated.
>>
>>
>> --
>> Regards/Groete/Mit freundlichen Grüßen/recuerdos/meilleures salutations/
>> distinti saluti/siong/duì yú/привет
>>
>> Jurgens de Bruin
>>
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>>
>
>


-- 
Regards/Groete/Mit freundlichen Grüßen/recuerdos/meilleures salutations/
distinti saluti/siong/duì yú/привет

Jurgens de Bruin