[Biopython] Bio.PDB.PDBParser() Superimposer()

[João Rodrigues]

Hi Jurgens,

When you pass the two sequences to the Superimposer I guess you can trim
the sequence to that which you want (pass a list of residues that is sliced
to those that you want to include). The only requirement would be that both
have the same number of atoms.

If this doesn't make much sense I can give an example with code.

Cheers,

João


2014/1/16 Jurgens de Bruin <debruinjj at gmail.com>

> Hi,
>
> I am trying to calculate the RMS for two pdb files but the proteins differ
> in length. Currently I want to exclude the leading/trailing parts of the
> longer sequence but I am having difficulty figuring out how I will be able
> to do this.
>
> Any help would be appreciated.
>
>
> --
> Regards/Groete/Mit freundlichen Grüßen/recuerdos/meilleures salutations/
> distinti saluti/siong/duì yú/привет
>
> Jurgens de Bruin
>
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