[Biopython] Problem installing biopython with Python 3.3.1.rc1

[Nicolas Joannin]

Hi Peter,

I need to update another machine, so I'll do that with the final version to
see if the problem still exists. Will post back when that's done.
Regarding the Entrez test, indeed, it doesn't fail every time. So no
worries there.

Cheers,
Nicolas



Nicolas Joannin, Ph.D.
Bioinformatics Center
Kyoto University, Uji campus, Japan



On Sun, Apr 7, 2013 at 11:41 PM, Peter Cock <p.j.a.cock at googlemail.com>wrote:

> On Sun, Apr 7, 2013 at 4:12 AM, Nicolas Joannin
> <nicolas.joannin at gmail.com> wrote:
> > Hi Peter,
> >
> > Thanks for the quick reply!
> > Indeed, I don't think it is a big issue for me, and I have also not had
> any
> > problems with Python 3.3.0 on another machine.
> > So, yes, it probably is linked to the Python 3.3.1rc1...
>
> I see that Python 3.3.1 final is out now - might be worth checking
> that too, and I'll try to update one of our buildslaves to use this.
>
> > However, I should point out that it is not only the Bio.bgzf that fails
> > testing.
> > There are also test_Entrez_online and test_SeqIO_index that are
> indicated as
> > "FAIL" (both of which I do not directly use).
>
> The test_SeqIO_index.py failures all looked to be BGZF related too.
>
> I missed the Entrez test, but as an online test that can sometimes
> fail intermittently anyway. The chances are on rerunning it'll be fine.
>
> Peter
>