[Biopython] MUSCLE for alignment

[林行众]

Thank you for you advice.
I will CC the maillling list.

regards

2013/4/6 Peter Cock <p.j.a.cock at googlemail.com>:
> On Sat, Apr 6, 2013 at 12:18 PM, 林行众 <linxzh1989 at gmail.com> wrote:
>> Thank you! Peter.
>> It really helps me.
>> If i do not specify it by: stdout, stderr = mcline()
>> the alignment will writen to stdout, instead of the output file.
>> Is it correct?
>
> MUSCLE will by default write the alignment to stdout, but you
> used the out argument to specify an output filename instead.
> In this case stdout will probably be empty.
>
> There are some stdout examples using MUSCLE in the
> Biopython Tutorial:
> http://biopython.org/DIST/docs/tutorial/Tutorial.html
> http://biopython.org/DIST/docs/tutorial/Tutorial.pdf
>
> Peter
>
> P.S. Please CC the mailing list.