[Biopython] MUSCLE for alignment
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linxzh1989 at gmail.com
Fri Apr 5 22:53:49 EDT 2013
Hi all !
I have a seqdump.fasta file:
>lcl|24977
TGAGAAAGACTTGAGAGGACA
>lcl|24977:8-21
GAGATGACTTAGAGGACA
I want to use a wrapper for Muscle in Biopython to align the two seq.
the alignment result will put into a existing fasta file.
>>>from Bio.Align.Applications import MuscleCommandline
>>>mcline = MuscleCommandline(input='seqdump.fasta',out='result.fasta')
But i can not find anything in the result.fasta after i run the command.
Do i have any missing to get the result?
regards
Lin
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