[Biopython] support for NCBI's .tbl format

Peter Cock p.j.a.cock at googlemail.com
Sun Sep 30 09:42:15 UTC 2012


On Sun, Sep 30, 2012 at 6:05 AM, Michael Thon <mike.thon at gmail.com> wrote:
> I wonder if there is any support in BioPython for outputting
> sequence features in NCBI's .tbl format which is needed for
> running tbl2asn. If not, where would it belong?  In Bio.SeqIO?

No there isn't, but it sounds like it could go in Bio.SeqIO
if you wrote it to operate the SeqRecord level. Internally
you could have a lower level SeqFeature based API...

Peter



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