[Biopython] topology of transmembrane proteins in BioPython

[Fields, Christopher J]

On Nov 20, 2012, at 9:28 AM, Peter Cock <p.j.a.cock at googlemail.com>
 wrote:

> On Tue, Nov 20, 2012 at 3:23 PM, Fields, Christopher J
> <cjfields at illinois.edu> wrote:
>> There was some code submitted to BioPerl a while back that does this, it's now in Lincoln's Bio-Graphics module (which uses libgd2):
>> 
>>    https://github.com/GMOD/Bio-Graphics/blob/master/lib/Bio/Graphics/DrawTransmembrane.pm
>> 
>> I recall testing it and it worked well, but it's been quite a while.  It seemed pretty straightforward if someone wanted to try porting it.
>> 
>> chris
> 
> That produces images like this does it?
> http://www0.cs.ucl.ac.uk/staff/T.Nugent/images/CLN3_Consensus_Labelled.png
> 
> From here:
> http://www0.cs.ucl.ac.uk/staff/T.Nugent/code.html

Yup, that's it!

chris