[Biopython] Digital gene expression

[Peter Cock]

On Sunday, February 12, 2012, Michiel de Hoon <mjldehoon at yahoo.com> wrote:
> Hi everybody,
>
> EdgeR and DESeq are popular R packages to analyze differential
> expression in digital gene expression methodologies such as
> RNAseq and CAGE. Is something similar to these R packages
> available in Python (or is anybody working on such a module
> for Biopython)? Not that I don't like EdgeR / DESeq, but I'd
> prefer something in Python so that I can understand what I
> am doing.
>
> Thanks,
> -Michiel.

I'm not sure, but try rpy or rpy2 for calling these R libraries from
Python. If you know both languages it is very powerful.

Peter