[Biopython] code to be removed in the next release
Michiel de Hoon
mjldehoon at yahoo.com
Sat Dec 18 02:35:44 UTC 2010
Hi everybody,
The following parts of Biopython were deprecated in release 1.53, and are scheduled to be removed in the next release of Biopython. Please let us know if you have any objections against removal.
Bio.ExPASy
the cgi argument in get_sprot_raw
Bio.GFF
(old Bio.GFF for access to a MySQL GFF database)
Bio.Motif.Parsers.AlignAce
CompareAceParser
CompareAceScanner
CompareAceConsumer
Bio.SubsMat:
mat_type keyword in SeqMat
SeqMat.letter_sum
SeqMat.all_letters_sum
Best,
--Michiel.
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