[Biopython] Sequence assembly in (bio)python

Fri Dec 3 07:45:26 UTC 2010

Hi,
I wonder if there is a sequence assembler (like phred, cap3)
implemented in python?
I am working on a small utility to assemble a handful of sequences and
in this case
I think that a standalone assembler might be overkill, and I would
like to tweak the parameters easily.

Alternatively, is there (bio)python bindings for any assembler
program? I could not find any in biopython.

thanks,
bjorn

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Björn Johansson
Assistant Professor
Departament of Biology
University of Minho
Campus de Gualtar
4710-057 Braga
PORTUGAL
http://www.bio.uminho.pt
http://sites.google.com/site/bjornhome
Work (direct) +351-253 601517
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