[Biopython] Bio.Application now subprocess?

[Peter]

On Sat, Apr 10, 2010 at 2:12 PM, Vincent Davis <vincent at vincentdavis.net> wrote:
> Let me say it was late at night when I started reading thorough this and I
> am very new to it so....
> The first function defines in Bio/Applications.py
> def generic_run(commandline):

OK, so you are looking at the API docs and/or the code.
Bits of Bio/Applications.py are deprecated, and I think
you are right - we can try and make the status clearer.

Peter