[Biopython] Biopython and Snow Leopard

[Peter]

On Wed, Sep 9, 2009 at 5:26 PM, Kelly F Oakeson<kelly.oakeson at utah.edu> wrote:
> Peter,
> I only ran the setup.py test, but here are the results:
> $ python setup.py test
> running test
> test_Ace ... ok
> test_AlignIO ... ok
> test_BioSQL ... skipping. Enter your settings in Tests/setup_BioSQL.py
> (not important if you do not plan to use BioSQL).
> test_BioSQL_SeqIO ... skipping. Enter your settings in Tests/
> setup_BioSQL.py (not important if you do not plan to use BioSQL).
> test_CAPS ... ok
> test_Clustalw ... ok
> test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you
> want to use Bio.Clustalw.
> test_Cluster ... skipping. If you want to use Bio.Cluster, install
> NumPy first and then reinstall Biopython
> ...
> Bio.Wise.psw docstring test ... ok
> Bio.Motif docstring test ... ok
> ----------------------------------------------------------------------
> Ran 124 tests in 62.858 seconds

Excellent - a clean bill of health.

Do you want to try installing NumPy now, and then reinstalling
Biopython to see if everything works? ;)

Peter