[Biopython] IPI fetching

[Yvan Strahm]

Peter wrote:
> On Tue, Sep 8, 2009 at 1:01 PM, Yvan Strahm<yvan.strahm at bccs.uib.no> wrote:
>> Hello All,
>>
>> I have a project with a bunch of IPI access number and need to get their
>> fasta sequence. Now I am using the SRS web site to get these sequence.
>> I found a old thread on Biopython-dev about IPI parseing
>> (http://portal.open-bio.org/pipermail/biopython-dev/2001-December/000771.html),
>> so I tried to use ExPASy.get_sprot_raw to get the sequence with no luck.
>>
>> Does anyone know how I can use the IPI accession number directly in
>> Biopython?
> 
> Can you give us a specific example of an IPI number and the FASTA
> record you want back?
> 
> Peter

IPI00109764

 > ipi|IPI00109764|IPI00109764.2 DNA TOPOISOMERASE 1.
MSGDHLHNDSQIEADFRLNDSHKHKDKHKDREHRHKEHKKDKDKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKERRKEEKIRAAG
DAKIKKEKENGFSSPPRIKDEPEDDGYFAPPKEDIKPLKRLRDEDDADYKPKKIKTEDIKKEKKRKSEEEEDGKLKKPKNKDKDKKVAEPDNKKKKPKKE
EEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNTITNLS
KCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPG
HKWKEVRHDNKVTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGET
ADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITL
QQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQL
MKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF


This particular entry has this Uniprot accession number:Q04750