[Biopython] IPI fetching

Peter biopython at maubp.freeserve.co.uk
Tue Sep 8 12:33:46 UTC 2009


On Tue, Sep 8, 2009 at 1:01 PM, Yvan Strahm<yvan.strahm at bccs.uib.no> wrote:
> Hello All,
>
> I have a project with a bunch of IPI access number and need to get their
> fasta sequence. Now I am using the SRS web site to get these sequence.
> I found a old thread on Biopython-dev about IPI parseing
> (http://portal.open-bio.org/pipermail/biopython-dev/2001-December/000771.html),
> so I tried to use ExPASy.get_sprot_raw to get the sequence with no luck.
>
> Does anyone know how I can use the IPI accession number directly in
> Biopython?

Can you give us a specific example of an IPI number and the FASTA
record you want back?

Peter



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